Loop J5_6SPC

3D structure

PDB id: 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.95 Å

Loop

Sequence: GCUGG*CGUGUGUGAAGAAGGU*AUUGUAAAGCACUUUA*UAAG*CAAGC
Length: 46 nucleotides
Bulged bases: 6SPC|1|a|G|38, 6SPC|1|a|G|402, 6SPC|1|a|U|423, 6SPC|1|a|A|426, 6SPC|1|a|G|427, 6SPC|1|a|A|429, 6SPC|1|a|U|431, 6SPC|1|a|U|432
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SPC|1|a|G|35
6SPC|1|a|C|36
6SPC|1|a|U|37
6SPC|1|a|G|38
6SPC|1|a|G|39
*
6SPC|1|a|C|397
6SPC|1|a|G|398
6SPC|1|a|U|399
6SPC|1|a|G|400
6SPC|1|a|U|401
6SPC|1|a|G|402
6SPC|1|a|U|403
6SPC|1|a|G|404
6SPC|1|a|A|405
6SPC|1|a|A|406
6SPC|1|a|G|407
6SPC|1|a|A|408
6SPC|1|a|A|409
6SPC|1|a|G|410
6SPC|1|a|G|411
6SPC|1|a|U|412
*
6SPC|1|a|A|419
6SPC|1|a|U|420
6SPC|1|a|U|421
6SPC|1|a|G|422
6SPC|1|a|U|423
6SPC|1|a|A|424
6SPC|1|a|A|425
6SPC|1|a|A|426
6SPC|1|a|G|427
6SPC|1|a|C|428
6SPC|1|a|A|429
6SPC|1|a|C|430
6SPC|1|a|U|431
6SPC|1|a|U|432
6SPC|1|a|U|433
6SPC|1|a|A|434
*
6SPC|1|a|U|491
6SPC|1|a|A|492
6SPC|1|a|A|493
6SPC|1|a|G|494
*
6SPC|1|a|C|539
6SPC|1|a|A|540
6SPC|1|a|A|541
6SPC|1|a|G|542
6SPC|1|a|C|543

Current chains

Chain a: 16S rRNA

Nearby chains

Chain d: 30S ribosomal protein S4
Chain l: 30S ribosomal protein S12

J5_6SPC_001