J5_6SPC_003
3D structure
- PDB id
- 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GCAAGUCAGCGG*CAGCGGCAGACGGG*CAC*GAC*GGCAGC
- Length
- 38 nucleotides
- Bulged bases
- 6SPC|1|a|A|59, 6SPC|1|a|A|65, 6SPC|1|a|A|103, 6SPC|1|a|A|347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPC|1|a|G|57
6SPC|1|a|C|58
6SPC|1|a|A|59
6SPC|1|a|A|60
6SPC|1|a|G|61
6SPC|1|a|U|62
6SPC|1|a|C|63
6SPC|1|a|A|65
6SPC|1|a|G|66
6SPC|1|a|C|67
6SPC|1|a|G|68
6SPC|1|a|G|69
*
6SPC|1|a|C|94
6SPC|1|a|A|95
6SPC|1|a|G|96
6SPC|1|a|C|97
6SPC|1|a|G|98
6SPC|1|a|G|99
6SPC|1|a|C|100
6SPC|1|a|A|101
6SPC|1|a|G|102
6SPC|1|a|A|103
6SPC|1|a|C|104
6SPC|1|a|G|105
6SPC|1|a|G|106
6SPC|1|a|G|107
*
6SPC|1|a|C|308
6SPC|1|a|A|309
6SPC|1|a|C|310
*
6SPC|1|a|G|331
6SPC|1|a|A|332
6SPC|1|a|C|333
*
6SPC|1|a|G|344
6SPC|1|a|G|345
6SPC|1|a|C|346
6SPC|1|a|A|347
6SPC|1|a|G|348
6SPC|1|a|C|349
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
Coloring options: