J5_6SPD_001

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAUC*GAGG

Length

24 nucleotides

Bulged bases

6SPD|1|A|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|C|47
6SPD|1|A|G|48
6SPD|1|A|A|49
6SPD|1|A|U|50
6SPD|1|A|G|51
6SPD|1|A|A|52
6SPD|1|A|A|53
6SPD|1|A|A|54
*
6SPD|1|A|U|116
6SPD|1|A|G|117
6SPD|1|A|A|118
6SPD|1|A|A|119
6SPD|1|A|U|120
6SPD|1|A|G|121
*
6SPD|1|A|C|130
6SPD|1|A|A|131
*
6SPD|1|A|U|148
6SPD|1|A|A|149
6SPD|1|A|U|150
6SPD|1|A|C|151
*
6SPD|1|A|G|175
6SPD|1|A|A|176
6SPD|1|A|G|177
6SPD|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34