J5_6SPD_005
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 6SPD|1|A|A|2049, 6SPD|1|A|A|2435, 6SPD|1|A|U|2436, 6SPD|1|A|U|2493, 6SPD|1|A|U|2596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPD|1|A|G|2044
6SPD|1|A|A|2045
6SPD|1|A|A|2046
6SPD|1|A|A|2047
6SPD|1|A|G|2048
6SPD|1|A|A|2049
6SPD|1|A|C|2050
6SPD|1|A|C|2051
*
6SPD|1|A|G|2433
6SPD|1|A|G|2434
6SPD|1|A|A|2435
6SPD|1|A|U|2436
6SPD|1|A|A|2437
6SPD|1|A|A|2438
6SPD|1|A|C|2439
6SPD|1|A|A|2440
6SPD|1|A|G|2441
*
6SPD|1|A|C|2485
6SPD|1|A|C|2486
6SPD|1|A|U|2487
6SPD|1|A|C|2488
6SPD|1|A|G|2489
6SPD|1|A|A|2490
6SPD|1|A|U|2491
6SPD|1|A|G|2492
6SPD|1|A|U|2493
6SPD|1|A|C|2494
*
6SPD|1|A|G|2569
6SPD|1|A|G|2570
6SPD|1|A|U|2571
6SPD|1|A|U|2572
6SPD|1|A|U|2573
6SPD|1|A|A|2574
6SPD|1|A|G|2575
*
6SPD|1|A|C|2593
6SPD|1|A|G|2594
6SPD|1|A|G|2595
6SPD|1|A|U|2596
6SPD|1|A|C|2597
6SPD|1|A|C|2598
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
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