J5_6SPD_006
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUUA*UUUG*CUC*GAG*CGGAUAAAA
- Length
- 23 nucleotides
- Bulged bases
- 6SPD|1|A|U|2063, 6SPD|1|A|G|2415, 6SPD|1|A|G|2416, 6SPD|1|A|A|2417, 6SPD|1|A|U|2418
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPD|1|A|U|2061
6SPD|1|A|U|2062
6SPD|1|A|U|2063
6SPD|1|A|A|2064
*
6SPD|1|A|U|2230
6SPD|1|A|U|2231
6SPD|1|A|U|2232
6SPD|1|A|G|2233
*
6SPD|1|A|C|2245
6SPD|1|A|U|2246
6SPD|1|A|C|2247
*
6SPD|1|A|G|2267
6SPD|1|A|A|2268
6SPD|1|A|G|2269
*
6SPD|1|A|C|2414
6SPD|1|A|G|2415
6SPD|1|A|G|2416
6SPD|1|A|A|2417
6SPD|1|A|U|2418
6SPD|1|A|A|2419
6SPD|1|A|A|2420
6SPD|1|A|A|2421
6SPD|1|A|A|2422
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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