J5_6SPE_001

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CGUG*CUUUA*UAAGC*GCAAG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPE|1|a|C|36
6SPE|1|a|U|37
6SPE|1|a|G|38
6SPE|1|a|G|39
*
6SPE|1|a|C|397
6SPE|1|a|G|398
6SPE|1|a|U|399
6SPE|1|a|G|400
*
6SPE|1|a|C|430
6SPE|1|a|U|431
6SPE|1|a|U|432
6SPE|1|a|U|433
6SPE|1|a|A|434
*
6SPE|1|a|U|491
6SPE|1|a|A|492
6SPE|1|a|A|493
6SPE|1|a|G|494
6SPE|1|a|C|495
*
6SPE|1|a|G|538
6SPE|1|a|C|539
6SPE|1|a|A|540
6SPE|1|a|A|541
6SPE|1|a|G|542

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12