J5_6SW9_001

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAGGGCU*GGCC(4AC)GAG

Length

34 nucleotides

Bulged bases

6SW9|1|2|A|44

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|C|42
6SW9|1|2|U|43
6SW9|1|2|A|44
6SW9|1|2|U|45
*
6SW9|1|2|A|412
6SW9|1|2|G|413
6SW9|1|2|U|414
6SW9|1|2|G|415
*
6SW9|1|2|C|433
6SW9|1|2|U|434
6SW9|1|2|U|435
6SW9|1|2|U|436
6SW9|1|2|U|437
6SW9|1|2|C|438
*
6SW9|1|2|G|458
6SW9|1|2|G|459
6SW9|1|2|A|460
6SW9|1|2|A|461
6SW9|1|2|U|462
6SW9|1|2|A|463
6SW9|1|2|A|464
6SW9|1|2|G|465
6SW9|1|2|G|466
6SW9|1|2|G|467
6SW9|1|2|C|468
6SW9|1|2|U|469
*
6SW9|1|2|G|507
6SW9|1|2|G|508
6SW9|1|2|C|509
6SW9|1|2|C|510
6SW9|1|2|4AC|511
6SW9|1|2|G|512
6SW9|1|2|A|513
6SW9|1|2|G|514

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain N

30S ribosomal protein S12

Chain V

30S ribosomal protein S24e