J5_6SWA_003
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6SWA|1|q|C|2268, 6SWA|1|q|U|2329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWA|1|q|G|1318
6SWA|1|q|G|1319
6SWA|1|q|A|1320
6SWA|1|q|G|1321
6SWA|1|q|U|1322
6SWA|1|q|C|1323
*
6SWA|1|q|G|1498
6SWA|1|q|G|1499
6SWA|1|q|A|1500
6SWA|1|q|C|1501
*
6SWA|1|q|G|1640
6SWA|1|q|U|1641
6SWA|1|q|U|1642
6SWA|1|q|C|1643
*
6SWA|1|q|G|2267
6SWA|1|q|C|2268
6SWA|1|q|C|2269
*
6SWA|1|q|G|2324
6SWA|1|q|C|2325
6SWA|1|q|A|2326
6SWA|1|q|G|2327
6SWA|1|q|A|2328
6SWA|1|q|U|2329
6SWA|1|q|C|2330
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain K
- 60S ribosomal protein L13
- Chain M
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L32
- Chain p
- 60S ribosomal protein L28
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: