J5_6SWA_004
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6SWA|1|q|G|3591, 6SWA|1|q|G|3596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SWA_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1423
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWA|1|q|G|2834
6SWA|1|q|C|2835
6SWA|1|q|A|2836
6SWA|1|q|A|2837
6SWA|1|q|G|2838
6SWA|1|q|C|2839
6SWA|1|q|C|2840
6SWA|1|q|G|2841
6SWA|1|q|G|2842
*
6SWA|1|q|U|2866
6SWA|1|q|G|2867
*
6SWA|1|q|U|3584
6SWA|1|q|G|3585
*
6SWA|1|q|C|3589
6SWA|1|q|G|3590
6SWA|1|q|G|3591
6SWA|1|q|A|3592
6SWA|1|q|C|3593
6SWA|1|q|C|3594
6SWA|1|q|A|3595
6SWA|1|q|G|3596
6SWA|1|q|G|3597
*
6SWA|1|q|C|3806
6SWA|1|q|A|3807
6SWA|1|q|C|3808
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain T
- 60S ribosomal protein L23
- Chain U
- 60S ribosomal protein L24
- Chain o
- 60S ribosomal protein L19
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