J5_6SWA_005
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6SWA|1|q|A|3879, 6SWA|1|q|A|4356, 6SWA|1|q|U|4412, 6SWA|1|q|G|4413, 6SWA|1|q|U|4517, 6SWA|1|q|U|4518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWA|1|q|A|3874
6SWA|1|q|G|3875
6SWA|1|q|A|3876
6SWA|1|q|A|3877
6SWA|1|q|G|3878
6SWA|1|q|A|3879
6SWA|1|q|C|3880
6SWA|1|q|C|3881
*
6SWA|1|q|G|4354
6SWA|1|q|G|4355
6SWA|1|q|A|4356
6SWA|1|q|U|4357
6SWA|1|q|A|4358
6SWA|1|q|A|4359
6SWA|1|q|C|4360
6SWA|1|q|U|4361
6SWA|1|q|G|4362
*
6SWA|1|q|C|4406
6SWA|1|q|U|4407
6SWA|1|q|U|4408
6SWA|1|q|C|4409
6SWA|1|q|G|4410
6SWA|1|q|A|4411
6SWA|1|q|U|4412
6SWA|1|q|G|4413
6SWA|1|q|U|4414
6SWA|1|q|C|4415
*
6SWA|1|q|G|4490
6SWA|1|q|G|4491
6SWA|1|q|U|4492
6SWA|1|q|U|4493
6SWA|1|q|U|4494
6SWA|1|q|A|4495
6SWA|1|q|G|4496
*
6SWA|1|q|U|4514
6SWA|1|q|A|4515
6SWA|1|q|G|4516
6SWA|1|q|U|4517
6SWA|1|q|U|4518
6SWA|1|q|U|4519
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain I
- 60S ribosomal protein L10
- Chain Y
- 60S ribosomal protein L27a
- Chain Z
- 60S ribosomal protein L29
Coloring options: