J5_6SWD_002

3D structure

PDB id

6SWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGGACGGC*GAU*AGG*CGCAG

Length

23 nucleotides

Bulged bases

6SWD|1|2|A|105, 6SWD|1|2|C|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWD|1|2|C|66
6SWD|1|2|G|67
6SWD|1|2|A|68
6SWD|1|2|G|69
*
6SWD|1|2|C|102
6SWD|1|2|G|103
6SWD|1|2|G|104
6SWD|1|2|A|105
6SWD|1|2|C|106
6SWD|1|2|G|107
6SWD|1|2|G|108
6SWD|1|2|C|109
*
6SWD|1|2|G|323
6SWD|1|2|A|324
6SWD|1|2|U|325
*
6SWD|1|2|A|346
6SWD|1|2|G|347
6SWD|1|2|G|348
*
6SWD|1|2|C|359
6SWD|1|2|G|360
6SWD|1|2|C|361
6SWD|1|2|A|362
6SWD|1|2|G|363

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain G

30S ribosomal protein S6e

Chain J

30S ribosomal protein S8e