3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
Length
35 nucleotides
Bulged bases
6SZS|1|A|A|2062, 6SZS|1|A|A|2448, 6SZS|1|A|U|2449, 6SZS|1|A|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SZS|1|A|G|2057
6SZS|1|A|A|2058
6SZS|1|A|A|2059
6SZS|1|A|A|2060
6SZS|1|A|G|2061
6SZS|1|A|A|2062
6SZS|1|A|C|2063
6SZS|1|A|C|2064
*
6SZS|1|A|G|2446
6SZS|1|A|G|2447
6SZS|1|A|A|2448
6SZS|1|A|U|2449
6SZS|1|A|A|2450
6SZS|1|A|A|2451
6SZS|1|A|C|2452
6SZS|1|A|A|2453
*
6SZS|1|A|U|2500
6SZS|1|A|C|2501
6SZS|1|A|G|2502
6SZS|1|A|A|2503
6SZS|1|A|U|2504
6SZS|1|A|G|2505
6SZS|1|A|U|2506
*
6SZS|1|A|G|2583
6SZS|1|A|U|2584
6SZS|1|A|U|2585
6SZS|1|A|U|2586
6SZS|1|A|A|2587
6SZS|1|A|G|2588
*
6SZS|1|A|C|2606
6SZS|1|A|G|2607
6SZS|1|A|G|2608
6SZS|1|A|U|2609
6SZS|1|A|C|2610
6SZS|1|A|C|2611

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22
Chain x
Transfer RNA; tRNA
Chain z
Peptide chain release factor 2

Coloring options:

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