J5_6T4Q_005
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6T4Q|1|C1|A|2404, 6T4Q|1|C1|A|2817, 6T4Q|1|C1|G|2874, 6T4Q|1|C1|U|2978, 6T4Q|1|C1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6T4Q|1|C1|A|2399
6T4Q|1|C1|G|2400
6T4Q|1|C1|A|2401
6T4Q|1|C1|A|2402
6T4Q|1|C1|G|2403
6T4Q|1|C1|A|2404
6T4Q|1|C1|C|2405
6T4Q|1|C1|C|2406
*
6T4Q|1|C1|G|2815
6T4Q|1|C1|G|2816
6T4Q|1|C1|A|2817
6T4Q|1|C1|U|2818
6T4Q|1|C1|A|2819
6T4Q|1|C1|A|2820
6T4Q|1|C1|C|2821
6T4Q|1|C1|U|2822
6T4Q|1|C1|G|2823
*
6T4Q|1|C1|C|2867
6T4Q|1|C1|U|2868
6T4Q|1|C1|U|2869
6T4Q|1|C1|C|2870
6T4Q|1|C1|G|2871
6T4Q|1|C1|A|2872
6T4Q|1|C1|U|2873
6T4Q|1|C1|G|2874
6T4Q|1|C1|U|2875
6T4Q|1|C1|C|2876
*
6T4Q|1|C1|G|2951
6T4Q|1|C1|G|2952
6T4Q|1|C1|U|2953
6T4Q|1|C1|U|2954
6T4Q|1|C1|U|2955
6T4Q|1|C1|A|2956
6T4Q|1|C1|G|2957
*
6T4Q|1|C1|U|2975
6T4Q|1|C1|A|2976
6T4Q|1|C1|G|2977
6T4Q|1|C1|U|2978
6T4Q|1|C1|U|2979
6T4Q|1|C1|U|2980
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain 8
- nascent chain
- Chain LA
- 60S ribosomal protein L2-A
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4-A
- Chain LI
- 60S ribosomal protein L10
- Chain LP
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
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