Loop J5_6T4Q

3D structure

PDB id: 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 6T4Q|1|C2|U|128, 6T4Q|1|C2|C|130, 6T4Q|1|C2|C|131, 6T4Q|1|C2|U|132, 6T4Q|1|C2|U|133, 6T4Q|1|C2|U|134, 6T4Q|1|C2|A|135, 6T4Q|1|C2|A|140, 6T4Q|1|C2|U|141, 6T4Q|1|C2|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6T4Q|1|C2|A|124
6T4Q|1|C2|U|125
6T4Q|1|C2|A|126
6T4Q|1|C2|G|127
6T4Q|1|C2|U|128
6T4Q|1|C2|U|129
6T4Q|1|C2|C|130
6T4Q|1|C2|C|131
6T4Q|1|C2|U|132
6T4Q|1|C2|U|133
6T4Q|1|C2|U|134
6T4Q|1|C2|A|135
6T4Q|1|C2|C|136
6T4Q|1|C2|U|137
6T4Q|1|C2|A|138
6T4Q|1|C2|C|139
6T4Q|1|C2|A|140
6T4Q|1|C2|U|141
6T4Q|1|C2|G|142
6T4Q|1|C2|G|143
*
6T4Q|1|C2|C|172
6T4Q|1|C2|A|173
6T4Q|1|C2|U|174
6T4Q|1|C2|G|175
6T4Q|1|C2|C|176
6T4Q|1|C2|U|177
6T4Q|1|C2|U|178
6T4Q|1|C2|A|179
6T4Q|1|C2|A|180
6T4Q|1|C2|A|181
6T4Q|1|C2|A|182
*
6T4Q|1|C2|U|203
6T4Q|1|C2|G|204
*
6T4Q|1|C2|C|263
6T4Q|1|C2|G|264
6T4Q|1|C2|A|265
*
6T4Q|1|C2|U|289
6T4Q|1|C2|G|290
6T4Q|1|C2|G|291
6T4Q|1|C2|U|292
6T4Q|1|C2|U|293

Current chains

Chain C2: 18S rRNA

Nearby chains

Chain SE: 40S ribosomal protein S4-A
Chain SG: 40S ribosomal protein S6-A
Chain SI: 40S ribosomal protein S8-A

J5_6T4Q_009