J5_6T7T_009

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6T7T|1|C2|U|128, 6T7T|1|C2|C|130, 6T7T|1|C2|U|132, 6T7T|1|C2|U|134, 6T7T|1|C2|A|135, 6T7T|1|C2|A|140, 6T7T|1|C2|U|141, 6T7T|1|C2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T7T|1|C2|A|124
6T7T|1|C2|U|125
6T7T|1|C2|A|126
6T7T|1|C2|G|127
6T7T|1|C2|U|128
6T7T|1|C2|U|129
6T7T|1|C2|C|130
6T7T|1|C2|C|131
6T7T|1|C2|U|132
6T7T|1|C2|U|133
6T7T|1|C2|U|134
6T7T|1|C2|A|135
6T7T|1|C2|C|136
6T7T|1|C2|U|137
6T7T|1|C2|A|138
6T7T|1|C2|C|139
6T7T|1|C2|A|140
6T7T|1|C2|U|141
6T7T|1|C2|G|142
6T7T|1|C2|G|143
*
6T7T|1|C2|C|172
6T7T|1|C2|A|173
6T7T|1|C2|U|174
6T7T|1|C2|G|175
6T7T|1|C2|C|176
6T7T|1|C2|U|177
6T7T|1|C2|U|178
6T7T|1|C2|A|179
6T7T|1|C2|A|180
6T7T|1|C2|A|181
6T7T|1|C2|A|182
*
6T7T|1|C2|U|203
6T7T|1|C2|G|204
*
6T7T|1|C2|C|263
6T7T|1|C2|G|264
6T7T|1|C2|A|265
*
6T7T|1|C2|U|289
6T7T|1|C2|G|290
6T7T|1|C2|G|291
6T7T|1|C2|U|292
6T7T|1|C2|U|293

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8