J5_6T83_011

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

6T83|1|2b|U|639, 6T83|1|2b|U|694, 6T83|1|2b|C|696, 6T83|1|2b|C|697, 6T83|1|2b|U|813, 6T83|1|2b|G|815, 6T83|1|2b|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|2b|A|636
6T83|1|2b|C|637
6T83|1|2b|U|638
6T83|1|2b|U|639
6T83|1|2b|U|640
6T83|1|2b|G|641
*
6T83|1|2b|U|693
6T83|1|2b|U|694
6T83|1|2b|U|695
6T83|1|2b|C|696
6T83|1|2b|C|697
6T83|1|2b|U|698
6T83|1|2b|U|699
*
6T83|1|2b|G|739
6T83|1|2b|A|740
6T83|1|2b|C|741
6T83|1|2b|U|742
6T83|1|2b|U|743
6T83|1|2b|U|744
*
6T83|1|2b|A|807
6T83|1|2b|U|808
6T83|1|2b|A|809
6T83|1|2b|G|810
6T83|1|2b|A|811
6T83|1|2b|A|812
6T83|1|2b|U|813
6T83|1|2b|A|814
6T83|1|2b|G|815
6T83|1|2b|G|816
6T83|1|2b|A|817
*
6T83|1|2b|U|854
6T83|1|2b|A|855
6T83|1|2b|A|856
6T83|1|2b|U|857
6T83|1|2b|G|858
6T83|1|2b|A|859
6T83|1|2b|U|860

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Hb

40S ribosomal protein S7-A

Chain Lb

40S ribosomal protein S11-A

Chain Nb

40S ribosomal protein S13

Chain Ry

60S ribosomal protein L19-A

Chain Wb

40S ribosomal protein S22-A