J5_6T83_012
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6T83|1|Ca|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T83_012 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.1146
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6T83|1|Aa|A|20
6T83|1|Aa|G|21
6T83|1|Aa|G|22
*
6T83|1|Ca|C|35
6T83|1|Ca|G|36
6T83|1|Ca|A|37
6T83|1|Ca|U|38
6T83|1|Ca|G|39
6T83|1|Ca|A|40
6T83|1|Ca|A|41
6T83|1|Ca|G|42
*
6T83|1|Ca|U|102
6T83|1|Ca|G|103
6T83|1|Ca|A|104
6T83|1|Ca|A|105
6T83|1|Ca|C|106
6T83|1|Ca|G|107
*
6T83|1|Ca|C|115
6T83|1|Ca|G|116
*
6T83|1|Ca|C|137
6T83|1|Ca|A|138
6T83|1|Ca|U|139
Current chains
- Chain Aa
- 25S rRNA
- Chain Ca
- 5.8S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L25
- Chain Pa
- 60S ribosomal protein L15-A
- Chain S
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L37-A
- Chain W
- 60S ribosomal protein L39
Coloring options: