3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UUGA*UUUG*CA*UG*CAGAAAA
Length
19 nucleotides
Bulged bases
6T83|1|Aa|G|2418, 6T83|1|Aa|A|2799, 6T83|1|Aa|G|2800, 6T83|1|Aa|A|2801, 6T83|1|Aa|A|2802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6T83_017 not in the Motif Atlas
Homologous match to J5_8P9A_015
Geometric discrepancy: 0.1252
The information below is about J5_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_08912.1
Basepair signature
cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6T83|1|Aa|U|2416
6T83|1|Aa|U|2417
6T83|1|Aa|G|2418
6T83|1|Aa|A|2419
*
6T83|1|Aa|U|2611
6T83|1|Aa|U|2612
6T83|1|Aa|U|2613
6T83|1|Aa|G|2614
*
6T83|1|Aa|C|2627
6T83|1|Aa|A|2628
*
6T83|1|Aa|U|2650
6T83|1|Aa|G|2651
*
6T83|1|Aa|C|2798
6T83|1|Aa|A|2799
6T83|1|Aa|G|2800
6T83|1|Aa|A|2801
6T83|1|Aa|A|2802
6T83|1|Aa|A|2803
6T83|1|Aa|A|2804

Current chains

Chain Aa
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L18-A
Chain Da
60S ribosomal protein L2-A
Chain E
60S ribosomal protein L21-A
Chain L
60S ribosomal protein L28
Chain M
60S ribosomal protein L29
Chain Pa
60S ribosomal protein L15-A
Chain Z
60S ribosomal protein L42-A

Coloring options:


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