J5_6T83_018

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6T83|1|a|A|541, 6T83|1|a|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|a|C|31
6T83|1|a|U|32
6T83|1|a|U|33
6T83|1|a|G|34
6T83|1|a|U|35
*
6T83|1|a|A|473
6T83|1|a|A|474
6T83|1|a|A|475
6T83|1|a|U|476
6T83|1|a|A|477
6T83|1|a|A|478
6T83|1|a|C|479
*
6T83|1|a|G|509
6T83|1|a|G|510
6T83|1|a|A|511
6T83|1|a|A|512
6T83|1|a|U|513
6T83|1|a|G|514
6T83|1|a|A|515
6T83|1|a|G|516
*
6T83|1|a|C|536
6T83|1|a|G|537
6T83|1|a|A|538
6T83|1|a|G|539
6T83|1|a|G|540
6T83|1|a|A|541
6T83|1|a|A|542
6T83|1|a|C|543
6T83|1|a|A|544
6T83|1|a|A|545
6T83|1|a|U|546
*
6T83|1|a|A|592
6T83|1|a|U|593
6T83|1|a|A|594
6T83|1|a|G|595

Current chains

Chain a

18S rRNA

Nearby chains

Chain 5

40S ribosomal protein S30-A

Chain k

40S ribosomal protein S9-A

Chain y

40S ribosomal protein S23-A