J5_6T83_021

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6T83|1|a|U|128, 6T83|1|a|U|132, 6T83|1|a|U|133, 6T83|1|a|U|134, 6T83|1|a|A|135, 6T83|1|a|C|136, 6T83|1|a|U|137, 6T83|1|a|A|140, 6T83|1|a|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|a|A|124
6T83|1|a|U|125
6T83|1|a|A|126
6T83|1|a|G|127
6T83|1|a|U|128
6T83|1|a|U|129
6T83|1|a|C|130
6T83|1|a|C|131
6T83|1|a|U|132
6T83|1|a|U|133
6T83|1|a|U|134
6T83|1|a|A|135
6T83|1|a|C|136
6T83|1|a|U|137
6T83|1|a|A|138
6T83|1|a|C|139
6T83|1|a|A|140
6T83|1|a|U|141
6T83|1|a|G|142
6T83|1|a|G|143
*
6T83|1|a|C|172
6T83|1|a|A|173
6T83|1|a|U|174
6T83|1|a|G|175
6T83|1|a|C|176
6T83|1|a|U|177
6T83|1|a|U|178
6T83|1|a|A|179
6T83|1|a|A|180
6T83|1|a|A|181
6T83|1|a|A|182
*
6T83|1|a|U|203
6T83|1|a|G|204
*
6T83|1|a|C|263
6T83|1|a|G|264
6T83|1|a|A|265
6T83|1|a|A|266
6T83|1|a|U|267
*
6T83|1|a|A|288
6T83|1|a|U|289
6T83|1|a|G|290
6T83|1|a|G|291
6T83|1|a|U|292
6T83|1|a|U|293

Current chains

Chain a

18S rRNA

Nearby chains

Chain f

40S ribosomal protein S4-A

Chain h

40S ribosomal protein S6-A

Chain j

40S ribosomal protein S8-A