J5_6T83_023
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6T83|1|1b|G|2116, 6T83|1|1b|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T83_023 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.1281
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6T83|1|1b|G|1906
6T83|1|1b|C|1907
6T83|1|1b|A|1908
6T83|1|1b|A|1909
6T83|1|1b|A|1910
6T83|1|1b|A|1911
6T83|1|1b|U|1912
6T83|1|1b|A|1913
6T83|1|1b|G|1914
*
6T83|1|1b|U|1938
6T83|1|1b|G|1939
*
6T83|1|1b|U|2109
6T83|1|1b|G|2110
*
6T83|1|1b|C|2114
6T83|1|1b|G|2115
6T83|1|1b|G|2116
6T83|1|1b|A|2117
6T83|1|1b|C|2118
6T83|1|1b|A|2119
6T83|1|1b|A|2120
6T83|1|1b|G|2121
6T83|1|1b|G|2122
*
6T83|1|1b|C|2331
6T83|1|1b|A|2332
6T83|1|1b|C|2333
Current chains
- Chain 1b
- 25S rRNA
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain By
- 60S ribosomal protein L3
- Chain Ry
- 60S ribosomal protein L19-A
- Chain Vy
- 60S ribosomal protein L23-A
- Chain Wy
- 60S ribosomal protein L24-A
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