J5_6TB3_005
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 6TB3|1|2|U|639, 6TB3|1|2|U|694, 6TB3|1|2|C|696, 6TB3|1|2|C|697, 6TB3|1|2|U|813, 6TB3|1|2|G|815, 6TB3|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TB3|1|2|A|636
6TB3|1|2|C|637
6TB3|1|2|U|638
6TB3|1|2|U|639
6TB3|1|2|U|640
6TB3|1|2|G|641
*
6TB3|1|2|U|693
6TB3|1|2|U|694
6TB3|1|2|U|695
6TB3|1|2|C|696
6TB3|1|2|C|697
6TB3|1|2|U|698
6TB3|1|2|U|699
*
6TB3|1|2|G|739
6TB3|1|2|A|740
6TB3|1|2|C|741
6TB3|1|2|U|742
6TB3|1|2|U|743
6TB3|1|2|U|744
*
6TB3|1|2|A|807
6TB3|1|2|U|808
6TB3|1|2|A|809
6TB3|1|2|G|810
6TB3|1|2|A|811
6TB3|1|2|A|812
6TB3|1|2|U|813
6TB3|1|2|A|814
6TB3|1|2|G|815
6TB3|1|2|G|816
6TB3|1|2|A|817
*
6TB3|1|2|U|854
6TB3|1|2|A|855
6TB3|1|2|A|856
6TB3|1|2|U|857
6TB3|1|2|G|858
6TB3|1|2|A|859
6TB3|1|2|U|860
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain BF
- 60S ribosomal protein L19-A
- Chain S
- 40S ribosomal protein S4-A
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- 40S ribosomal protein S22-A
Coloring options: