J5_6TB3_006
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6TB3|1|BS|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TB3_006 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0628
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TB3|1|BQ|A|20
6TB3|1|BQ|G|21
6TB3|1|BQ|G|22
*
6TB3|1|BS|C|35
6TB3|1|BS|G|36
6TB3|1|BS|A|37
6TB3|1|BS|U|38
6TB3|1|BS|G|39
6TB3|1|BS|A|40
6TB3|1|BS|A|41
6TB3|1|BS|G|42
*
6TB3|1|BS|U|102
6TB3|1|BS|G|103
6TB3|1|BS|A|104
6TB3|1|BS|A|105
6TB3|1|BS|C|106
6TB3|1|BS|G|107
*
6TB3|1|BS|C|115
6TB3|1|BS|G|116
*
6TB3|1|BS|C|137
6TB3|1|BS|A|138
6TB3|1|BS|U|139
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AL
- 60S ribosomal protein L39
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BP
- 60S ribosomal protein L35-A
Coloring options: