J5_6TB3_010
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6TB3|1|BQ|A|2404, 6TB3|1|BQ|A|2817, 6TB3|1|BQ|U|2873, 6TB3|1|BQ|G|2874, 6TB3|1|BQ|U|2875, 6TB3|1|BQ|U|2978, 6TB3|1|BQ|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TB3|1|BQ|A|2399
6TB3|1|BQ|G|2400
6TB3|1|BQ|A|2401
6TB3|1|BQ|A|2402
6TB3|1|BQ|G|2403
6TB3|1|BQ|A|2404
6TB3|1|BQ|C|2405
6TB3|1|BQ|C|2406
*
6TB3|1|BQ|G|2815
6TB3|1|BQ|G|2816
6TB3|1|BQ|A|2817
6TB3|1|BQ|U|2818
6TB3|1|BQ|A|2819
6TB3|1|BQ|A|2820
6TB3|1|BQ|C|2821
6TB3|1|BQ|U|2822
6TB3|1|BQ|G|2823
*
6TB3|1|BQ|C|2867
6TB3|1|BQ|U|2868
6TB3|1|BQ|U|2869
6TB3|1|BQ|C|2870
6TB3|1|BQ|G|2871
6TB3|1|BQ|A|2872
6TB3|1|BQ|U|2873
6TB3|1|BQ|G|2874
6TB3|1|BQ|U|2875
6TB3|1|BQ|C|2876
*
6TB3|1|BQ|G|2951
6TB3|1|BQ|G|2952
6TB3|1|BQ|U|2953
6TB3|1|BQ|U|2954
6TB3|1|BQ|U|2955
6TB3|1|BQ|A|2956
6TB3|1|BQ|G|2957
*
6TB3|1|BQ|U|2975
6TB3|1|BQ|A|2976
6TB3|1|BQ|G|2977
6TB3|1|BQ|U|2978
6TB3|1|BQ|U|2979
6TB3|1|BQ|U|2980
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain AW
- 60S ribosomal protein L2-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BA
- 60S ribosomal protein L3
- Chain BD
- 60S ribosomal protein L10
- Chain BE
- 60S ribosomal protein L4-A
- Chain n
- Transfer RNA; tRNA
Coloring options: