J5_6TBV_008
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6TBV|1|23S1|A|2448, 6TBV|1|23S1|U|2449, 6TBV|1|23S1|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TBV|1|23S1|G|2057
6TBV|1|23S1|A|2058
6TBV|1|23S1|A|2059
6TBV|1|23S1|A|2060
6TBV|1|23S1|G|2061
6TBV|1|23S1|A|2062
6TBV|1|23S1|C|2063
6TBV|1|23S1|C|2064
*
6TBV|1|23S1|G|2446
6TBV|1|23S1|G|2447
6TBV|1|23S1|A|2448
6TBV|1|23S1|U|2449
6TBV|1|23S1|A|2450
6TBV|1|23S1|A|2451
6TBV|1|23S1|C|2452
6TBV|1|23S1|A|2453
*
6TBV|1|23S1|U|2500
6TBV|1|23S1|C|2501
6TBV|1|23S1|G|2502
6TBV|1|23S1|2MA|2503
6TBV|1|23S1|PSU|2504
6TBV|1|23S1|G|2505
6TBV|1|23S1|U|2506
*
6TBV|1|23S1|G|2583
6TBV|1|23S1|U|2584
6TBV|1|23S1|U|2585
6TBV|1|23S1|U|2586
6TBV|1|23S1|A|2587
6TBV|1|23S1|G|2588
*
6TBV|1|23S1|C|2606
6TBV|1|23S1|G|2607
6TBV|1|23S1|G|2608
6TBV|1|23S1|U|2609
6TBV|1|23S1|C|2610
6TBV|1|23S1|C|2611
Current chains
- Chain 23S1
- 23S rRNA
Nearby chains
- Chain L021
- 50S ribosomal protein L2
- Chain L031
- 50S ribosomal protein L3
- Chain L041
- 50S ribosomal protein L4
- Chain L151
- 50S ribosomal protein L15
- Chain L221
- 50S ribosomal protein L22
- Chain L321
- 50S ribosomal protein L32
- Chain PTR1
- Transfer RNA; tRNA
- Chain SPE1
- SpeFL
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