J5_6TH6_001

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|Aa|C|30
6TH6|1|Aa|U|31
6TH6|1|Aa|A|32
6TH6|1|Aa|U|33
*
6TH6|1|Aa|A|391
6TH6|1|Aa|G|392
6TH6|1|Aa|U|393
6TH6|1|Aa|G|394
*
6TH6|1|Aa|C|412
6TH6|1|Aa|U|413
6TH6|1|Aa|U|414
6TH6|1|Aa|U|415
6TH6|1|Aa|U|416
6TH6|1|Aa|C|417
*
6TH6|1|Aa|G|437
6TH6|1|Aa|G|438
6TH6|1|Aa|A|439
6TH6|1|Aa|A|440
6TH6|1|Aa|U|441
6TH6|1|Aa|A|442
6TH6|1|Aa|A|443
6TH6|1|Aa|G|444
*
6TH6|1|Aa|C|490
6TH6|1|Aa|G|491
6TH6|1|Aa|A|492
6TH6|1|Aa|G|493

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

30S ribosomal protein S4

Chain Ao

30S ribosomal protein S12

Chain Aw

30S ribosomal protein S24e