J5_6TH6_003

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGACG(A2M)A(OMG)*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6TH6|1|BA|C|59

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|C|56
6TH6|1|BA|G|57
6TH6|1|BA|A|58
6TH6|1|BA|C|59
6TH6|1|BA|G|60
6TH6|1|BA|A2M|61
6TH6|1|BA|A|62
6TH6|1|BA|OMG|63
*
6TH6|1|BA|C|124
6TH6|1|BA|G|125
6TH6|1|BA|A|126
6TH6|1|BA|A|127
6TH6|1|BA|U|128
6TH6|1|BA|G|129
*
6TH6|1|BA|C|138
6TH6|1|BA|G|139
*
6TH6|1|BA|C|152
6TH6|1|BA|A|153
6TH6|1|BA|C|154
*
6TH6|1|BA|G|167
6TH6|1|BA|G|168
6TH6|1|BA|G|169

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e