J5_6TH6_004

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCAAAC*GUGUUGUA*UGAGUAC*GGAAGCUG*CAAC

Length

33 nucleotides

Bulged bases

6TH6|1|BA|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|G|259
6TH6|1|BA|C|260
6TH6|1|BA|A|261
6TH6|1|BA|A|262
6TH6|1|BA|A|263
6TH6|1|BA|C|264
*
6TH6|1|BA|G|297
6TH6|1|BA|U|298
6TH6|1|BA|G|299
6TH6|1|BA|U|300
6TH6|1|BA|U|301
6TH6|1|BA|G|302
6TH6|1|BA|U|303
6TH6|1|BA|A|304
*
6TH6|1|BA|U|411
6TH6|1|BA|G|412
6TH6|1|BA|A|413
6TH6|1|BA|G|414
6TH6|1|BA|U|415
6TH6|1|BA|A|416
6TH6|1|BA|C|417
*
6TH6|1|BA|G|438
6TH6|1|BA|G|439
6TH6|1|BA|A|440
6TH6|1|BA|A|441
6TH6|1|BA|G|442
6TH6|1|BA|C|443
6TH6|1|BA|U|444
6TH6|1|BA|G|445
*
6TH6|1|BA|C|461
6TH6|1|BA|A|462
6TH6|1|BA|A|463
6TH6|1|BA|C|464

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L7Ae

Chain BP

50S ribosomal protein L15e