J5_6TH6_010

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAAGACC*(OMG)GA(4SU)AACAG*CCUCGCUGU*GUUUAG*CGGAUG

Length

38 nucleotides

Bulged bases

6TH6|1|BA|A|2552, 6TH6|1|BA|G|2609, 6TH6|1|BA|U|2689, 6TH6|1|BA|U|2714

QA status

Modified nucleotides: OMG, 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|C|2169
6TH6|1|BA|G|2170
6TH6|1|BA|A|2171
6TH6|1|BA|A|2172
6TH6|1|BA|G|2173
6TH6|1|BA|A|2174
6TH6|1|BA|C|2175
6TH6|1|BA|C|2176
*
6TH6|1|BA|OMG|2550
6TH6|1|BA|G|2551
6TH6|1|BA|A|2552
6TH6|1|BA|4SU|2553
6TH6|1|BA|A|2554
6TH6|1|BA|A|2555
6TH6|1|BA|C|2556
6TH6|1|BA|A|2557
6TH6|1|BA|G|2558
*
6TH6|1|BA|C|2602
6TH6|1|BA|C|2603
6TH6|1|BA|U|2604
6TH6|1|BA|C|2605
6TH6|1|BA|G|2606
6TH6|1|BA|C|2607
6TH6|1|BA|U|2608
6TH6|1|BA|G|2609
6TH6|1|BA|U|2610
*
6TH6|1|BA|G|2687
6TH6|1|BA|U|2688
6TH6|1|BA|U|2689
6TH6|1|BA|U|2690
6TH6|1|BA|A|2691
6TH6|1|BA|G|2692
*
6TH6|1|BA|C|2710
6TH6|1|BA|G|2711
6TH6|1|BA|G|2712
6TH6|1|BA|A|2713
6TH6|1|BA|U|2714
6TH6|1|BA|G|2715

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15