J5_6TNN_004
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6TNN|1|U|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TNN_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1086
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6TNN|1|U|C|626
6TNN|1|U|G|627
6TNN|1|U|A|628
6TNN|1|U|G|629
6TNN|1|U|U|630
6TNN|1|U|U|631
*
6TNN|1|U|A|713
6TNN|1|U|G|714
6TNN|1|U|A|715
6TNN|1|U|C|716
*
6TNN|1|U|G|854
6TNN|1|U|U|855
6TNN|1|U|U|856
6TNN|1|U|C|857
*
6TNN|1|U|G|1234
6TNN|1|U|C|1235
*
6TNN|1|U|G|1288
6TNN|1|U|A|1289
6TNN|1|U|G|1290
6TNN|1|U|A|1291
6TNN|1|U|A|1292
6TNN|1|U|U|1293
6TNN|1|U|G|1294
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L20
- Chain k
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L35
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