J5_6TNN_006
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUCAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 6TNN|1|U|A|2089, 6TNN|1|U|A|2475, 6TNN|1|U|U|2476, 6TNN|1|U|U|2531, 6TNN|1|U|G|2532, 6TNN|1|U|U|2533, 6TNN|1|U|U|2612, 6TNN|1|U|U|2636, 6TNN|1|U|C|2637
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TNN|1|U|G|2084
6TNN|1|U|A|2085
6TNN|1|U|A|2086
6TNN|1|U|A|2087
6TNN|1|U|G|2088
6TNN|1|U|A|2089
6TNN|1|U|C|2090
6TNN|1|U|C|2091
*
6TNN|1|U|G|2473
6TNN|1|U|G|2474
6TNN|1|U|A|2475
6TNN|1|U|U|2476
6TNN|1|U|A|2477
6TNN|1|U|A|2478
6TNN|1|U|C|2479
6TNN|1|U|A|2480
6TNN|1|U|G|2481
*
6TNN|1|U|C|2525
6TNN|1|U|C|2526
6TNN|1|U|U|2527
6TNN|1|U|C|2528
6TNN|1|U|G|2529
6TNN|1|U|A|2530
6TNN|1|U|U|2531
6TNN|1|U|G|2532
6TNN|1|U|U|2533
6TNN|1|U|C|2534
*
6TNN|1|U|G|2609
6TNN|1|U|G|2610
6TNN|1|U|U|2611
6TNN|1|U|U|2612
6TNN|1|U|C|2613
6TNN|1|U|A|2614
6TNN|1|U|G|2615
*
6TNN|1|U|C|2633
6TNN|1|U|G|2634
6TNN|1|U|G|2635
6TNN|1|U|U|2636
6TNN|1|U|C|2637
6TNN|1|U|C|2638
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain X
- 50S ribosomal protein L3
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain f
- 50S ribosomal protein L16
- Chain o
- 50S ribosomal protein L27
- Chain p
- 50S ribosomal protein L32
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