J5_6TNU_001

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6TNU|1|2|A|541, 6TNU|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|2|C|31
6TNU|1|2|U|32
6TNU|1|2|U|33
6TNU|1|2|G|34
6TNU|1|2|U|35
*
6TNU|1|2|A|473
6TNU|1|2|A|474
6TNU|1|2|A|475
6TNU|1|2|U|476
6TNU|1|2|A|477
6TNU|1|2|A|478
6TNU|1|2|C|479
*
6TNU|1|2|G|509
6TNU|1|2|G|510
6TNU|1|2|A|511
6TNU|1|2|A|512
6TNU|1|2|U|513
6TNU|1|2|G|514
6TNU|1|2|A|515
6TNU|1|2|G|516
*
6TNU|1|2|C|536
6TNU|1|2|G|537
6TNU|1|2|A|538
6TNU|1|2|G|539
6TNU|1|2|G|540
6TNU|1|2|A|541
6TNU|1|2|A|542
6TNU|1|2|C|543
6TNU|1|2|A|544
6TNU|1|2|A|545
6TNU|1|2|U|546
*
6TNU|1|2|A|592
6TNU|1|2|U|593
6TNU|1|2|A|594
6TNU|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A