J5_6TNU_003

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAU*AUG*CGA*UGGUU

Length

43 nucleotides

Bulged bases

6TNU|1|2|U|128, 6TNU|1|2|C|130, 6TNU|1|2|C|131, 6TNU|1|2|U|132, 6TNU|1|2|U|133, 6TNU|1|2|U|134, 6TNU|1|2|U|137, 6TNU|1|2|A|140, 6TNU|1|2|U|141, 6TNU|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|2|A|124
6TNU|1|2|U|125
6TNU|1|2|A|126
6TNU|1|2|G|127
6TNU|1|2|U|128
6TNU|1|2|U|129
6TNU|1|2|C|130
6TNU|1|2|C|131
6TNU|1|2|U|132
6TNU|1|2|U|133
6TNU|1|2|U|134
6TNU|1|2|A|135
6TNU|1|2|C|136
6TNU|1|2|U|137
6TNU|1|2|A|138
6TNU|1|2|C|139
6TNU|1|2|A|140
6TNU|1|2|U|141
6TNU|1|2|G|142
6TNU|1|2|G|143
*
6TNU|1|2|C|172
6TNU|1|2|A|173
6TNU|1|2|U|174
6TNU|1|2|G|175
6TNU|1|2|C|176
6TNU|1|2|U|177
6TNU|1|2|U|178
6TNU|1|2|A|179
6TNU|1|2|A|180
6TNU|1|2|A|181
6TNU|1|2|A|182
6TNU|1|2|U|183
*
6TNU|1|2|A|202
6TNU|1|2|U|203
6TNU|1|2|G|204
*
6TNU|1|2|C|263
6TNU|1|2|G|264
6TNU|1|2|A|265
*
6TNU|1|2|U|289
6TNU|1|2|G|290
6TNU|1|2|G|291
6TNU|1|2|U|292
6TNU|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8