J5_6TNU_005

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUGG*CUUUCCUU*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU

Length

48 nucleotides

Bulged bases

6TNU|1|2|U|639, 6TNU|1|2|U|694, 6TNU|1|2|C|696, 6TNU|1|2|C|697, 6TNU|1|2|U|813, 6TNU|1|2|G|815, 6TNU|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|2|A|636
6TNU|1|2|C|637
6TNU|1|2|U|638
6TNU|1|2|U|639
6TNU|1|2|U|640
6TNU|1|2|G|641
6TNU|1|2|G|642
*
6TNU|1|2|C|692
6TNU|1|2|U|693
6TNU|1|2|U|694
6TNU|1|2|U|695
6TNU|1|2|C|696
6TNU|1|2|C|697
6TNU|1|2|U|698
6TNU|1|2|U|699
*
6TNU|1|2|G|739
6TNU|1|2|A|740
6TNU|1|2|C|741
6TNU|1|2|U|742
6TNU|1|2|U|743
6TNU|1|2|U|744
*
6TNU|1|2|A|807
6TNU|1|2|U|808
6TNU|1|2|A|809
6TNU|1|2|G|810
6TNU|1|2|A|811
6TNU|1|2|A|812
6TNU|1|2|U|813
6TNU|1|2|A|814
6TNU|1|2|G|815
6TNU|1|2|G|816
6TNU|1|2|A|817
6TNU|1|2|C|818
6TNU|1|2|G|819
6TNU|1|2|U|820
6TNU|1|2|U|821
6TNU|1|2|U|822
*
6TNU|1|2|A|850
6TNU|1|2|U|851
6TNU|1|2|C|852
6TNU|1|2|G|853
6TNU|1|2|U|854
6TNU|1|2|A|855
6TNU|1|2|A|856
6TNU|1|2|U|857
6TNU|1|2|G|858
6TNU|1|2|A|859
6TNU|1|2|U|860

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A