J5_6TPQ_001
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 6TPQ|1|U|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TPQ_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.096
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6TPQ|1|U|C|45
6TPQ|1|U|G|46
6TPQ|1|U|A|47
6TPQ|1|U|U|48
6TPQ|1|U|G|49
6TPQ|1|U|A|50
6TPQ|1|U|A|51
6TPQ|1|U|G|52
*
6TPQ|1|U|C|113
6TPQ|1|U|G|114
6TPQ|1|U|A|115
6TPQ|1|U|A|116
6TPQ|1|U|U|117
6TPQ|1|U|G|118
*
6TPQ|1|U|C|127
6TPQ|1|U|A|128
*
6TPQ|1|U|U|147
6TPQ|1|U|A|148
6TPQ|1|U|U|149
*
6TPQ|1|U|A|176
6TPQ|1|U|A|177
6TPQ|1|U|G|178
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
Coloring options: