J5_6TPQ_002
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG
- Length
- 33 nucleotides
- Bulged bases
- 6TPQ|1|U|U|299, 6TPQ|1|U|C|450
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TPQ|1|U|C|269
6TPQ|1|U|C|270
6TPQ|1|U|A|271
6TPQ|1|U|A|272
6TPQ|1|U|A|273
6TPQ|1|U|C|274
*
6TPQ|1|U|G|293
6TPQ|1|U|G|294
6TPQ|1|U|G|295
6TPQ|1|U|U|296
6TPQ|1|U|U|297
6TPQ|1|U|G|298
6TPQ|1|U|U|299
6TPQ|1|U|A|300
*
6TPQ|1|U|U|414
6TPQ|1|U|G|415
6TPQ|1|U|A|416
6TPQ|1|U|G|417
6TPQ|1|U|U|418
6TPQ|1|U|A|419
6TPQ|1|U|C|420
*
6TPQ|1|U|G|444
6TPQ|1|U|G|445
6TPQ|1|U|A|446
6TPQ|1|U|A|447
6TPQ|1|U|U|448
6TPQ|1|U|C|449
6TPQ|1|U|C|450
6TPQ|1|U|G|451
*
6TPQ|1|U|C|466
6TPQ|1|U|A|467
6TPQ|1|U|A|468
6TPQ|1|U|G|469
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain u
- 50S ribosomal protein L28
Coloring options: