J5_6TPQ_006
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGU*GUUCAG*CGGUCC
- Length
- 38 nucleotides
- Bulged bases
- 6TPQ|1|U|A|2089, 6TPQ|1|U|A|2475, 6TPQ|1|U|U|2476, 6TPQ|1|U|U|2612, 6TPQ|1|U|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6TPQ|1|U|G|2084
6TPQ|1|U|A|2085
6TPQ|1|U|A|2086
6TPQ|1|U|A|2087
6TPQ|1|U|G|2088
6TPQ|1|U|A|2089
6TPQ|1|U|C|2090
6TPQ|1|U|C|2091
*
6TPQ|1|U|G|2473
6TPQ|1|U|G|2474
6TPQ|1|U|A|2475
6TPQ|1|U|U|2476
6TPQ|1|U|A|2477
6TPQ|1|U|A|2478
6TPQ|1|U|C|2479
6TPQ|1|U|A|2480
6TPQ|1|U|G|2481
*
6TPQ|1|U|C|2525
6TPQ|1|U|C|2526
6TPQ|1|U|U|2527
6TPQ|1|U|C|2528
6TPQ|1|U|G|2529
6TPQ|1|U|A|2530
6TPQ|1|U|U|2531
6TPQ|1|U|G|2532
6TPQ|1|U|U|2533
*
6TPQ|1|U|G|2610
6TPQ|1|U|U|2611
6TPQ|1|U|U|2612
6TPQ|1|U|C|2613
6TPQ|1|U|A|2614
6TPQ|1|U|G|2615
*
6TPQ|1|U|C|2633
6TPQ|1|U|G|2634
6TPQ|1|U|G|2635
6TPQ|1|U|U|2636
6TPQ|1|U|C|2637
6TPQ|1|U|C|2638
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain X
- 50S ribosomal protein L3
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain f
- 50S ribosomal protein L16
- Chain o
- 50S ribosomal protein L27
- Chain p
- 50S ribosomal protein L32
Coloring options: