J5_6UO1_005

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

6UO1|1|1A|G|1758, 6UO1|1|1A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6UO1_005 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0553

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6UO1|1|1A|G|1674
6UO1|1|1A|C|1675
6UO1|1|1A|A|1676
6UO1|1|1A|A|1677
6UO1|1|1A|G|1678
6UO1|1|1A|U|1679
6UO1|1|1A|U|1680
6UO1|1|1A|G|1681
6UO1|1|1A|G|1682
*
6UO1|1|1A|U|1706
6UO1|1|1A|G|1707
*
6UO1|1|1A|C|1751
6UO1|1|1A|C|1752
*
6UO1|1|1A|G|1756
6UO1|1|1A|U|1757
6UO1|1|1A|G|1758
6UO1|1|1A|A|1759
6UO1|1|1A|A|1760
6UO1|1|1A|C|1761
6UO1|1|1A|A|1762
6UO1|1|1A|G|1763
6UO1|1|1A|G|1764
*
6UO1|1|1A|C|1988
6UO1|1|1A|G|1989
6UO1|1|1A|C|1990

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA