J5_6UO1_014

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG

Length

26 nucleotides

Bulged bases

6UO1|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|2A|C|601
6UO1|1|2A|G|602
6UO1|1|2A|A|603
6UO1|1|2A|G|604
*
6UO1|1|2A|C|624
6UO1|1|2A|G|625
6UO1|1|2A|U|626
6UO1|1|2A|A|627
6UO1|1|2A|G|628
*
6UO1|1|2A|C|635
6UO1|1|2A|G|636
6UO1|1|2A|A|637
6UO1|1|2A|G|638
*
6UO1|1|2A|C|650
6UO1|1|2A|G|651
6UO1|1|2A|C|652
6UO1|1|2A|A|652|||A
6UO1|1|2A|A|652|||B
6UO1|1|2A|G|652|||C
6UO1|1|2A|C|652|||D
*
6UO1|1|2A|G|652|||U
6UO1|1|2A|C|652|||V
6UO1|1|2A|A|653
6UO1|1|2A|A|654
6UO1|1|2A|A|655
6UO1|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15