J5_6UZ7_004

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAGUUCCUUUACUACAU*AUGCUUAAAA*UG*CGA*UGGUU

Length

38 nucleotides

Bulged bases

6UZ7|1|2|U|128, 6UZ7|1|2|U|132, 6UZ7|1|2|U|133, 6UZ7|1|2|U|134, 6UZ7|1|2|A|135, 6UZ7|1|2|C|136, 6UZ7|1|2|C|139, 6UZ7|1|2|A|140, 6UZ7|1|2|U|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UZ7|1|2|A|124
6UZ7|1|2|U|125
6UZ7|1|2|A|126
6UZ7|1|2|G|127
6UZ7|1|2|U|128
6UZ7|1|2|U|129
6UZ7|1|2|C|130
6UZ7|1|2|C|131
6UZ7|1|2|U|132
6UZ7|1|2|U|133
6UZ7|1|2|U|134
6UZ7|1|2|A|135
6UZ7|1|2|C|136
6UZ7|1|2|U|137
6UZ7|1|2|A|138
6UZ7|1|2|C|139
6UZ7|1|2|A|140
6UZ7|1|2|U|141
*
6UZ7|1|2|A|172
6UZ7|1|2|U|173
6UZ7|1|2|G|174
6UZ7|1|2|C|175
6UZ7|1|2|U|176
6UZ7|1|2|U|177
6UZ7|1|2|A|178
6UZ7|1|2|A|179
6UZ7|1|2|A|180
6UZ7|1|2|A|181
*
6UZ7|1|2|U|202
6UZ7|1|2|G|203
*
6UZ7|1|2|C|262
6UZ7|1|2|G|263
6UZ7|1|2|A|264
*
6UZ7|1|2|U|288
6UZ7|1|2|G|289
6UZ7|1|2|G|290
6UZ7|1|2|U|291
6UZ7|1|2|U|292

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8