J5_6UZ7_005

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUGGAAUAGGACGUUUGG*CCAUCGUAAUGAU

Length

50 nucleotides

Bulged bases

6UZ7|1|2|U|637, 6UZ7|1|2|U|638, 6UZ7|1|2|U|694, 6UZ7|1|2|C|696, 6UZ7|1|2|C|697, 6UZ7|1|2|U|812, 6UZ7|1|2|G|814, 6UZ7|1|2|U|819, 6UZ7|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UZ7|1|2|A|635
6UZ7|1|2|C|636
6UZ7|1|2|U|637
6UZ7|1|2|U|638
6UZ7|1|2|U|639
6UZ7|1|2|G|640
*
6UZ7|1|2|U|693
6UZ7|1|2|U|694
6UZ7|1|2|U|695
6UZ7|1|2|C|696
6UZ7|1|2|C|697
6UZ7|1|2|U|698
6UZ7|1|2|U|699
*
6UZ7|1|2|G|739
6UZ7|1|2|A|740
6UZ7|1|2|C|741
6UZ7|1|2|U|742
6UZ7|1|2|U|743
6UZ7|1|2|U|744
*
6UZ7|1|2|A|806
6UZ7|1|2|U|807
6UZ7|1|2|G|808
6UZ7|1|2|G|809
6UZ7|1|2|A|810
6UZ7|1|2|A|811
6UZ7|1|2|U|812
6UZ7|1|2|A|813
6UZ7|1|2|G|814
6UZ7|1|2|G|815
6UZ7|1|2|A|816
6UZ7|1|2|C|817
6UZ7|1|2|G|818
6UZ7|1|2|U|819
6UZ7|1|2|U|820
6UZ7|1|2|U|821
6UZ7|1|2|G|822
6UZ7|1|2|G|823
*
6UZ7|1|2|C|847
6UZ7|1|2|C|848
6UZ7|1|2|A|849
6UZ7|1|2|U|850
6UZ7|1|2|C|851
6UZ7|1|2|G|852
6UZ7|1|2|U|853
6UZ7|1|2|A|854
6UZ7|1|2|A|855
6UZ7|1|2|U|856
6UZ7|1|2|G|857
6UZ7|1|2|A|858
6UZ7|1|2|U|859

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AR

KLLA0E12453p

Chain E

40S ribosomal protein S4

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

40S ribosomal protein S22