J5_6UZ7_006
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6UZ7|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6UZ7_006 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0797
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6UZ7|1|5|A|20
6UZ7|1|5|G|21
6UZ7|1|5|G|22
*
6UZ7|1|8|C|35
6UZ7|1|8|G|36
6UZ7|1|8|A|37
6UZ7|1|8|U|38
6UZ7|1|8|G|39
6UZ7|1|8|A|40
6UZ7|1|8|A|41
6UZ7|1|8|G|42
*
6UZ7|1|8|U|102
6UZ7|1|8|G|103
6UZ7|1|8|A|104
6UZ7|1|8|A|105
6UZ7|1|8|C|106
6UZ7|1|8|G|107
*
6UZ7|1|8|C|115
6UZ7|1|8|G|116
*
6UZ7|1|8|C|137
6UZ7|1|8|A|138
6UZ7|1|8|U|139
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain AN
- Ribosomal protein L15
- Chain AX
- 60S ribosomal protein L25
- Chain Bh
- KLLA0F05247p
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39
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