J5_6UZ7_007
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6UZ7|1|5|U|1407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6UZ7_007 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0969
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.2
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6UZ7|1|5|G|631
6UZ7|1|5|G|632
6UZ7|1|5|A|633
6UZ7|1|5|G|634
6UZ7|1|5|U|635
6UZ7|1|5|C|636
*
6UZ7|1|5|G|770
6UZ7|1|5|G|771
6UZ7|1|5|A|772
6UZ7|1|5|C|773
*
6UZ7|1|5|G|912
6UZ7|1|5|U|913
6UZ7|1|5|U|914
6UZ7|1|5|C|915
*
6UZ7|1|5|G|1346
6UZ7|1|5|C|1347
*
6UZ7|1|5|G|1402
6UZ7|1|5|C|1403
6UZ7|1|5|A|1404
6UZ7|1|5|G|1405
6UZ7|1|5|A|1406
6UZ7|1|5|U|1407
6UZ7|1|5|C|1408
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- KLLA0B07139p
- Chain AL
- 60S ribosomal protein L13
- Chain Ba
- RPL28
- Chain Be
- KLLA0E06843p
Coloring options: