J5_6UZ7_011
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6UZ7|1|5|G|2387, 6UZ7|1|5|A|2767, 6UZ7|1|5|G|2768, 6UZ7|1|5|A|2769, 6UZ7|1|5|A|2770, 6UZ7|1|5|A|2771
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6UZ7_011 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.1437
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6UZ7|1|5|U|2385
6UZ7|1|5|U|2386
6UZ7|1|5|G|2387
6UZ7|1|5|A|2388
*
6UZ7|1|5|U|2579
6UZ7|1|5|U|2580
6UZ7|1|5|U|2581
6UZ7|1|5|G|2582
*
6UZ7|1|5|C|2595
6UZ7|1|5|A|2596
*
6UZ7|1|5|U|2618
6UZ7|1|5|G|2619
*
6UZ7|1|5|C|2766
6UZ7|1|5|A|2767
6UZ7|1|5|G|2768
6UZ7|1|5|A|2769
6UZ7|1|5|A|2770
6UZ7|1|5|A|2771
6UZ7|1|5|A|2772
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain AA
- KLLA0D16027p
- Chain AN
- Ribosomal protein L15
- Chain AQ
- KLLA0A07227p
- Chain AT
- KLLA0E23651p
- Chain Ba
- RPL28
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- 60S ribosomal protein L44
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