J5_6UZ7_013

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGUCUCAAA*UGACAAUAAAUAAC*GGAAUGAGUACA*UUAACGAGGAACAAC*GUAG

Length

56 nucleotides

Bulged bases

6UZ7|1|2|A|540, 6UZ7|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UZ7|1|2|C|31
6UZ7|1|2|U|32
6UZ7|1|2|U|33
6UZ7|1|2|G|34
6UZ7|1|2|U|35
6UZ7|1|2|C|36
6UZ7|1|2|U|37
6UZ7|1|2|C|38
6UZ7|1|2|A|39
6UZ7|1|2|A|40
6UZ7|1|2|A|41
*
6UZ7|1|2|U|465
6UZ7|1|2|G|466
6UZ7|1|2|A|467
6UZ7|1|2|C|468
6UZ7|1|2|A|469
6UZ7|1|2|A|470
6UZ7|1|2|U|471
6UZ7|1|2|A|472
6UZ7|1|2|A|473
6UZ7|1|2|A|474
6UZ7|1|2|U|475
6UZ7|1|2|A|476
6UZ7|1|2|A|477
6UZ7|1|2|C|478
*
6UZ7|1|2|G|508
6UZ7|1|2|G|509
6UZ7|1|2|A|510
6UZ7|1|2|A|511
6UZ7|1|2|U|512
6UZ7|1|2|G|513
6UZ7|1|2|A|514
6UZ7|1|2|G|515
6UZ7|1|2|U|516
6UZ7|1|2|A|517
6UZ7|1|2|C|518
6UZ7|1|2|A|519
*
6UZ7|1|2|U|531
6UZ7|1|2|U|532
6UZ7|1|2|A|533
6UZ7|1|2|A|534
6UZ7|1|2|C|535
6UZ7|1|2|G|536
6UZ7|1|2|A|537
6UZ7|1|2|G|538
6UZ7|1|2|G|539
6UZ7|1|2|A|540
6UZ7|1|2|A|541
6UZ7|1|2|C|542
6UZ7|1|2|A|543
6UZ7|1|2|A|544
6UZ7|1|2|C|545
*
6UZ7|1|2|G|591
6UZ7|1|2|U|592
6UZ7|1|2|A|593
6UZ7|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

KLLA0F23265p

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain X

RPS23

Chain Y

40S ribosomal protein S24

Chain e

40S ribosomal protein S30