J5_6V39_007
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CUGG*CGUG*CUUUA*UAAG*CGAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6V39_007 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.1236
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6V39|1|sN1|C|38
6V39|1|sN1|U|39
6V39|1|sN1|G|40
6V39|1|sN1|G|41
*
6V39|1|sN1|C|399
6V39|1|sN1|G|400
6V39|1|sN1|U|401
6V39|1|sN1|G|402
*
6V39|1|sN1|C|432
6V39|1|sN1|U|433
6V39|1|sN1|U|434
6V39|1|sN1|U|435
6V39|1|sN1|A|436
*
6V39|1|sN1|U|494
6V39|1|sN1|A|495
6V39|1|sN1|A|496
6V39|1|sN1|G|497
*
6V39|1|sN1|C|542
6V39|1|sN1|G|543
6V39|1|sN1|A|544
6V39|1|sN1|G|545
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
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