J5_6V3A_001

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6V3A|1|AN1|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6V3A_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0995

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6V3A|1|AN1|C|54
6V3A|1|AN1|G|55
6V3A|1|AN1|A|56
6V3A|1|AN1|U|57
6V3A|1|AN1|G|58
6V3A|1|AN1|A|59
6V3A|1|AN1|A|60
6V3A|1|AN1|A|61
*
6V3A|1|AN1|U|123
6V3A|1|AN1|G|124
6V3A|1|AN1|A|125
6V3A|1|AN1|A|126
6V3A|1|AN1|U|127
6V3A|1|AN1|G|128
*
6V3A|1|AN1|C|137
6V3A|1|AN1|A|138
*
6V3A|1|AN1|U|155
6V3A|1|AN1|A|156
6V3A|1|AN1|U|157
*
6V3A|1|AN1|A|183
6V3A|1|AN1|G|184
6V3A|1|AN1|G|185

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34