J5_6V3A_008

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUGG*CGUG*CUUUAAG*CAGAAUAAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6V3A_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1328

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6V3A|1|sN1|C|38
6V3A|1|sN1|U|39
6V3A|1|sN1|G|40
6V3A|1|sN1|G|41
*
6V3A|1|sN1|C|399
6V3A|1|sN1|G|400
6V3A|1|sN1|U|401
6V3A|1|sN1|G|402
*
6V3A|1|sN1|C|432
6V3A|1|sN1|U|433
6V3A|1|sN1|U|434
6V3A|1|sN1|U|435
6V3A|1|sN1|A|436
6V3A|1|sN1|A|437
6V3A|1|sN1|G|438
*
6V3A|1|sN1|C|489
6V3A|1|sN1|A|490
6V3A|1|sN1|G|491
6V3A|1|sN1|A|492
6V3A|1|sN1|A|493
6V3A|1|sN1|U|494
6V3A|1|sN1|A|495
6V3A|1|sN1|A|496
6V3A|1|sN1|G|497
*
6V3A|1|sN1|C|542
6V3A|1|sN1|G|543
6V3A|1|sN1|A|544
6V3A|1|sN1|G|545

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12