J5_6VMI_002
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUAGAAAUAACU*AGACCC*GUUG*CCAAUC*GAAGAACUAAUG
- Length
- 40 nucleotides
- Bulged bases
- 6VMI|1|A|A|1869, 6VMI|1|A|C|1901, 6VMI|1|A|G|2292, 6VMI|1|A|U|2299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VMI|1|A|C|1865
6VMI|1|A|U|1866
6VMI|1|A|A|1867
6VMI|1|A|G|1868
6VMI|1|A|A|1869
6VMI|1|A|A|1870
6VMI|1|A|A|1871
6VMI|1|A|U|1872
6VMI|1|A|A|1873
6VMI|1|A|A|1874
6VMI|1|A|C|1875
6VMI|1|A|U|1876
*
6VMI|1|A|A|1898
6VMI|1|A|G|1899
6VMI|1|A|A|1900
6VMI|1|A|C|1901
6VMI|1|A|C|1902
6VMI|1|A|C|1903
*
6VMI|1|A|G|2019
6VMI|1|A|U|2020
6VMI|1|A|U|2021
6VMI|1|A|G|2022
*
6VMI|1|A|C|2271
6VMI|1|A|C|2272
6VMI|1|A|A|2273
6VMI|1|A|A|2274
6VMI|1|A|U|2275
6VMI|1|A|C|2276
*
6VMI|1|A|G|2289
6VMI|1|A|A|2290
6VMI|1|A|A|2291
6VMI|1|A|G|2292
6VMI|1|A|A|2293
6VMI|1|A|A|2294
6VMI|1|A|C|2295
6VMI|1|A|U|2296
6VMI|1|A|A|2297
6VMI|1|A|A|2298
6VMI|1|A|U|2299
6VMI|1|A|G|2300
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
- Chain c
- 39S ribosomal protein L44, mitochondrial
- Chain g
- 39S ribosomal protein L49, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: