J5_6VMI_006
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AGAAGACC*GGAUAACAG*CCUCGAUGUUG*UGAGUUCAG*CGGUUU
- Length
- 43 nucleotides
- Bulged bases
- 6VMI|1|A|A|2725, 6VMI|1|A|A|2935, 6VMI|1|A|U|2936, 6VMI|1|A|G|2992, 6VMI|1|A|U|2993, 6VMI|1|A|G|3068, 6VMI|1|A|U|3072, 6VMI|1|A|U|3096, 6VMI|1|A|U|3097
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VMI|1|A|A|2720
6VMI|1|A|G|2721
6VMI|1|A|A|2722
6VMI|1|A|A|2723
6VMI|1|A|G|2724
6VMI|1|A|A|2725
6VMI|1|A|C|2726
6VMI|1|A|C|2727
*
6VMI|1|A|G|2933
6VMI|1|A|G|2934
6VMI|1|A|A|2935
6VMI|1|A|U|2936
6VMI|1|A|A|2937
6VMI|1|A|A|2938
6VMI|1|A|C|2939
6VMI|1|A|A|2940
6VMI|1|A|G|2941
*
6VMI|1|A|C|2985
6VMI|1|A|C|2986
6VMI|1|A|U|2987
6VMI|1|A|C|2988
6VMI|1|A|G|2989
6VMI|1|A|A|2990
6VMI|1|A|U|2991
6VMI|1|A|G|2992
6VMI|1|A|U|2993
6VMI|1|A|U|2994
6VMI|1|A|G|2995
*
6VMI|1|A|U|3067
6VMI|1|A|G|3068
6VMI|1|A|A|3069
6VMI|1|A|G|3070
6VMI|1|A|U|3071
6VMI|1|A|U|3072
6VMI|1|A|C|3073
6VMI|1|A|A|3074
6VMI|1|A|G|3075
*
6VMI|1|A|C|3093
6VMI|1|A|G|3094
6VMI|1|A|G|3095
6VMI|1|A|U|3096
6VMI|1|A|U|3097
6VMI|1|A|U|3098
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain A6
- P-site and E-site tRNA
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: